Hg_chrom6_TN10mRNA_11403
Organism: Heterodera glycines Gene Locus: chr6:1408759-1416200 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 0.87 | 0.537 | 1.018 | 0.689 | 0.454 | 0.914 | 0.295 | 1.925 | 1.41 | 0.418 | 1.737 | 1.969 | 1.211 | 0.562 | 0.759 | 0.968 | 1.402 | 1.514 | 1.447 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10754
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.044
|
0.164
|
0.009
|
0.208
|
0.420
|
0.496
|
0.348
|
0.005
|
0.619
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010237
|
1.000
|
1.000
|
Hsc_gene_24707.t1
|
Hsc_gene_2273.t1;Hsc_gene_24707.t1
|
— |
Q7YQK4.1 Large neutral amino acids transporter small subunit 1 [Oryctolagus cuniculus]
|
KAI1725709.1 amino acid permease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.880|GO:0005575_0.796|GO:0110165_0.795|GO:0009987_0.792|GO:0006810_0.771|GO:0051179_0.771|GO:0051234_0.771|GO:0016020_0.762|GO:0055085_0.753|GO:0071944_0.753|GO:0005886_0.741|GO:0003674_0.708|GO:0005215_0.627|GO:0022857_0.627|GO:0003333_0.595|GO:0006865_0.595|GO:0071705_0.532|GO:0015711_0.501
|
IPR002293+43-465+|IPR050598+34-506+
|
— |
PF13520+43-465+Amino_acid_permease
|
G3DSA:1.20.1740.10:FF:000003+38-488+Y+L_amino_acid_transporter_1_isoform_X1
|
PTHR11785+34-506+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-508
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
56120.130
|
4.816
|
-6.500
|
13.189
|
14.567
|
29.921
|
70.079
|
6.102
|
7.087
|
51.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
2954.161
|
961.179
|
1354.589
|
2387.463
|
2842.747
|
3377.375
|
2168.905
|
1290.447
|
848.445
|
6894.608
|
4303.395
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.266
|
1.175
|
0.926
|
0.220
|
0.264
|
-0.629
|
-1.498
|
0.893
|
-1.585
|
— | — | — | — |
No JSON data available for plots.