SCN Proteipedia

Hg_chrom6_TN10mRNA_11414

Organism: Heterodera glycines Gene Locus: chr6:1473271-1484828 Feature type: polypeptide

Protein Sequence

Length: 764

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.081	0.7	1.142	0.812	1.003	1.477	1.044	1.898	1.018	1.309	0.635	0.77	1.454	0.982	1.042	0.841	0.794	0.813	0.604	0.77	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_10764	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	PVLKRKG	—	—	—	—	—	—	0.000	—	—	0.536	0.176	0.009	0.650	0.248	0.260	0.192	0.009	0.142	0.037

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010242	1.000	1.000	Hsc_gene_24694.t1	Hsc_gene_24694.t1	—	P56399.1 Ubiquitin carboxyl-terminal hydrolase 5 [Mus musculus]	KAH7721977.1 ubiquitin carboxyl-terminal hydrolase [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004843\|GO:0008270\|GO:0016579	GO:0008150_0.886\|GO:0005575_0.867\|GO:0110165_0.867\|GO:0003674_0.785\|GO:0008152_0.721\|GO:0005622_0.702\|GO:0065007_0.702\|GO:0050789_0.697\|GO:0003824_0.665\|GO:0009987_0.618\|GO:0044238_0.609\|GO:0016787_0.588\|GO:0043170_0.582\|GO:0016020_0.581\|GO:0140096_0.574\|GO:0008233_0.559\|GO:0043226_0.550\|GO:0019783_0.536\|GO:0101005_0.536\|GO:0043229_0.524\|GO:0019538_0.518\|GO:0005737_0.513\|GO:0043227_0.505\|GO:0019222_0.502\|GO:0050794_0.502	IPR001394+311-758+\|IPR001607+156-269_180-236_181-248+\|IPR013083+8-102_151-256+\|IPR015940+616-657_618-656_618-665+\|IPR016652+10-684_669-763+\|IPR018200+312-327_706-724+\|IPR028889+311-762+\|IPR038765+307-761+\|IPR041432+23-84+\|IPR050185+286-761+	SM00165+618-656+\|SM00290+180-236+	PF00443+311-758+Ubiquitin_carboxyl-terminal_hydrolase\|PF02148+181-248+Zn-finger_in_ubiquitin-hydrolases_and_other_protein\|PF17807+23-84+Variant_UBP_zinc_finger\|PF22562+618-665+UBA-like_domain	—	PTHR21646+286-761+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	578-722	2.000	1-577;723-764	2g45_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.501	84064.820	5.993	-8.500	25.393	12.435	44.895	55.105	13.089	12.304	50.916

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	blue	1407.496	1197.520	914.830	964.028	1271.955	1219.845	1549.647	917.742	482.497	2782.586	1796.833

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.617	-0.450	0.184	0.368	—	0.356	-0.518	0.900	-2.621	—	—	—	—

No JSON data available for plots.

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