Hg_chrom6_TN10mRNA_11423
Organism: Heterodera glycines Gene Locus: chr6:1560880-1561971 Feature type: polypeptideProtein Sequence
Length: 248
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.516 | 2.251 | 0.44 | 0.139 | 1.478 | 1.344 | 0.576 | 0.605 | 2.151 | 0.872 | 3.055 | 0.949 | 1.232 | 0.233 | 0.576 | 0.691 | 0.661 | 0.305 | 1.861 | 0.949 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10772
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RKWKKEFGIEMRKRFH,GIKKTGKYSKKIWNKIEEKIAKKLGIGRTKIYEWKKELKLNQRKIYGKNYYAKKKQEFIKRISKKGKQKQIAKELGIGKTVFRKWKKEFGIE
|
— | — | — | — |
1-22
|
0.890
|
0.998
|
0.000
|
0.000
|
0.760
|
0.136
|
0.016
|
0.449
|
0.177
|
0.059
|
0.106
|
0.014
|
0.134
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000071
|
17.000
|
1.000
|
Hsc_gene_24717.t1
|
— | — | — |
KAI3417802.1 hypothetical protein GPALN_012077 [Globodera pallida]
|
OGX29887
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-248
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
29372.130
|
10.648
|
30.500
|
35.484
|
11.290
|
59.274
|
40.726
|
24.194
|
11.290
|
33.871
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
150.477
|
0.000
|
1.309
|
82.725
|
17.879
|
2.030
|
0.202
|
0.000
|
105.320
|
540.292
|
353.875
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.740
|
10.799
|
6.085
|
-2.247
|
-3.130
|
— |
-4.847
|
— | — | — |
-4.763
|
— | — |