Hg_chrom6_TN10mRNA_11425
Organism: Heterodera glycines Gene Locus: chr6:1571781-1576467 Feature type: polypeptideProtein Sequence
Length: 394
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 0.944 | 0.738 | 0.875 | 1.184 | 1.432 | 0.665 | 1.142 | 1.748 | 1.132 | 1.154 | 1.194 | 2.327 | 0.488 | 0.466 | 1.595 | 0.874 | 0.423 | 0.586 | 0.821 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10774
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.734
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
41-66
|
0.974
|
35-59
|
1.000
|
— | — |
0.024
|
— | — |
0.482
|
0.104
|
0.046
|
0.509
|
0.394
|
0.150
|
0.129
|
0.015
|
0.122
|
0.266
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000891
|
4.000
|
2.000
|
Hsc_gene_17899.t1;Hsc_gene_17899.t2
|
— | — | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.951|GO:0003674_0.816|GO:0032502_0.749|GO:0048856_0.749|GO:0009653_0.690|GO:0048646_0.680|GO:0003824_0.679|GO:0051703_0.676|GO:0030435_0.673|GO:0043934_0.673|GO:0099120_0.673|GO:0030587_0.670|GO:0140096_0.668|GO:0016740_0.665|GO:0016772_0.655|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016301_0.650|GO:0016773_0.650
|
IPR001870+196-387+|IPR003877+269-386_271-383+|IPR013320+208-387+|IPR043136+186-394+|IPR044736+253-383+
|
SM00449+269-386+
|
PF00622+271-383+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-203
|
2.000
|
1-148;204-394
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.652
|
44328.460
|
6.409
|
-0.500
|
23.350
|
14.213
|
49.492
|
50.508
|
12.183
|
11.168
|
44.924
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
magenta
|
103.714
|
83.540
|
158.437
|
110.536
|
145.330
|
211.486
|
216.294
|
66.771
|
23.427
|
64.030
|
46.629
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
— |
-0.409
|
0.363
|
0.555
|
— |
-1.772
|
1.836
|
— | — | — | — | — |
No JSON data available for plots.