Hg_chrom6_TN10mRNA_11429
Organism: Heterodera glycines Gene Locus: chr6:1607639-1618139 Feature type: polypeptideProtein Sequence
Length: 768
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.12 | 0.999 | 1.278 | 0.718 | 1.628 | 1.903 | 0.605 | 1.497 | 0.55 | 1.003 | 0.848 | 0.996 | 0.94 | 0.926 | 1.674 | 0.911 | 0.939 | 0.513 | 1.002 | 0.383 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10778
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRSR,RRRK,PKRRK,KRRAEEEQMRARKEKI,KRHIRTIYDKKKRRKSD,KKKRRKSDGERKRKRGTR,KKNEAEEAPATPTKTKPKR,KRRKEKRHIRTIYDKKKRR,RRKEKRHIRTIYDKKKRRK,RKEKRHIRTIYDKKKRRKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.936
|
0.057
|
0.018
|
0.202
|
0.018
|
0.018
|
0.021
|
0.006
|
0.075
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004305
|
1.000
|
2.000
|
Hsc_gene_1717.t1;Hsc_gene_24681.t1
|
Hsc_gene_24680.t1
|
— | — |
KAI3418378.1 hypothetical protein GPALN_009699 [Globodera pallida]
|
HST96588
|
0.470
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018501+40-97+
|
— |
PF02791+40-97+DDT_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;143-222;288-657
|
3.000
|
3-142;223-287;658-768
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
87138.280
|
5.660
|
-11.500
|
33.594
|
8.984
|
57.422
|
42.578
|
16.797
|
16.797
|
48.438
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
659.476
|
1161.142
|
727.090
|
714.017
|
855.873
|
748.410
|
822.193
|
371.873
|
432.278
|
535.774
|
491.418
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.906
|
-0.839
|
— |
0.230
|
-0.179
|
— |
-1.115
|
1.287
|
— | — | — | — | — |
No JSON data available for plots.