Hg_chrom6_TN10mRNA_11434
Organism: Heterodera glycines Gene Locus: chr6:1653262-1665016 Feature type: polypeptideProtein Sequence
Length: 797
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.138 | 0.963 | 0.913 | 0.995 | 0.941 | 1.319 | 0.747 | 2.321 | 0.809 | 1.102 | 0.456 | 1.255 | 1.185 | 1.11 | 1.332 | 1.201 | 0.617 | 0.932 | 1.641 | 0.738 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10783
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
35-71
|
0.970
|
— | — |
0.000
|
— | — |
0.272
|
0.183
|
0.017
|
0.596
|
0.300
|
0.449
|
0.257
|
0.051
|
0.304
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002285
|
2.000
|
2.000
|
Hsc_gene_24675.t1;Hsc_gene_24675.t2
|
Hsc_gene_24675.t1;Hsc_gene_24675.t2
|
— |
Q965W9.1 Myotubularin-related protein 9 [Caenorhabditis elegans]
|
KAI1732208.1 myotubularin-like phosphatase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.893|GO:0110165_0.885|GO:0008150_0.860|GO:0003674_0.844|GO:0009987_0.811|GO:0005622_0.798|GO:0065007_0.703|GO:0050789_0.683|GO:0005737_0.678|GO:0050794_0.677|GO:0016020_0.567|GO:0008152_0.550|GO:0003824_0.548|GO:0044237_0.523|GO:0044238_0.517|GO:0005488_0.513
|
IPR010569+158-498_173-551+|IPR011993+4-148+|IPR029021+183-555+|IPR030564+22-686+
|
— |
PF06602+158-498+Myotubularin-like_phosphatase_domain
|
— |
PTHR10807+22-686+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
583-797
|
1.000
|
1-582
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
88984.290
|
6.946
|
9.500
|
24.843
|
13.551
|
46.299
|
53.701
|
14.178
|
10.665
|
52.196
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
2633.162
|
810.030
|
624.602
|
632.895
|
810.491
|
757.519
|
1230.695
|
579.230
|
468.735
|
9126.485
|
5416.021
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.604
|
-0.493
|
0.127
|
0.324
|
— |
0.710
|
-0.489
|
1.229
|
— | — | — | — | — |
No JSON data available for plots.