Hg_chrom6_TN10mRNA_11439
Organism: Heterodera glycines Gene Locus: chr6:1682640-1686778 Feature type: polypeptideProtein Sequence
Length: 270
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 1.206 | 0.875 | 0.255 | 1.42 | 1.235 | 0.485 | 1.481 | 0.741 | 1.001 | 0.954 | 1.961 | 1.029 | 1.425 | 1.965 | 0.529 | 0.971 | 1.01 | 0.855 | 0.871 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10787
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.915
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRAR,KRVTGNFVSRIAERNPRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.179
|
0.955
|
0.245
|
0.178
|
0.022
|
0.016
|
0.020
|
0.021
|
0.045
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010246
|
1.000
|
1.000
|
Hsc_gene_24669.t1
|
Hsc_gene_24669.t1
|
— |
Q8BJZ4.2 Small ribosomal subunit protein mS35 [Mus musculus]
|
KAH7730551.1 Protein MRPS-35 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0032543
|
GO:0005575_0.890|GO:0110165_0.887|GO:0005622_0.862|GO:0016020_0.803|GO:0043226_0.801|GO:0043229_0.787|GO:0005737_0.758|GO:0043227_0.756|GO:0043231_0.726|GO:0003674_0.651|GO:0005739_0.564
|
IPR019349+139-231+|IPR039848+57-262+
|
— |
PF10213+139-231+Mitochondrial_ribosomal_subunit_protein
|
— |
PTHR13490+57-262+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79;239-270
|
1.000
|
80-238
|
7nsj_Ak
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
31352.720
|
9.778
|
11.000
|
32.222
|
10.741
|
51.852
|
48.148
|
18.889
|
13.333
|
45.926
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
steelblue
|
2411.375
|
4626.362
|
2426.703
|
1953.541
|
2163.905
|
2062.543
|
2284.897
|
1598.579
|
2023.345
|
2613.559
|
2360.610
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.162
|
-1.381
|
-0.203
|
0.116
|
— |
0.158
|
-0.475
|
0.659
|
— | — | — | — | — |
No JSON data available for plots.