Hg_chrom6_TN10mRNA_11444
Organism: Heterodera glycines Gene Locus: chr6:1707955-1709926 Feature type: polypeptideProtein Sequence
Length: 521
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.87 | 1.339 | 0.803 | 1.059 | 1.376 | 0.984 | 0.228 | 1.631 | 1.28 | 1.634 | 1.483 | 1.016 | 1.28 | 0.517 | 0.901 | 0.932 | 1.133 | 0.669 | 1.181 | 0.452 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10792
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKEYALATFLDVRFKDK,KKKNCLADCLPTCQKKIKD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.666
|
0.148
|
0.027
|
0.403
|
0.224
|
0.109
|
0.116
|
0.223
|
0.161
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000117
|
10.000
|
4.000
|
Hsc_gene_14127.t1;Hsc_gene_15599.t1;Hsc_gene_20567.t1;Hsc_gene_23071.t1
|
Hsc_gene_14127.t1;Hsc_gene_15599.t1
|
— | — |
KAH7678440.1 zinc finger protein, partial [Aphelenchus avenae]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.901|GO:0110165_0.895|GO:0005622_0.854|GO:0003674_0.850|GO:0016020_0.805|GO:0005737_0.796|GO:0043226_0.796|GO:0005488_0.788|GO:0043229_0.782|GO:0043227_0.755|GO:0005515_0.753|GO:0043231_0.714|GO:0042802_0.672|GO:0005634_0.640|GO:0031974_0.588|GO:0043233_0.588|GO:0070013_0.588|GO:0031981_0.579|GO:0005654_0.565
|
IPR012337+139-458+|IPR052035+2-454+
|
— | — | — |
PTHR46481+2-454+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-521
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
59928.190
|
8.389
|
16.500
|
30.134
|
10.940
|
53.167
|
46.833
|
17.466
|
12.668
|
43.186
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
107.018
|
42.447
|
60.491
|
43.921
|
37.755
|
48.524
|
14.782
|
75.729
|
120.712
|
256.303
|
198.193
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-1.712
|
0.541
|
-2.224
|
— | — | — | — | — |
No JSON data available for plots.