Hg_chrom6_TN10mRNA_11445
Organism: Heterodera glycines Gene Locus: chr6:1732517-1737737 Feature type: polypeptideProtein Sequence
Length: 1,061
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.603 | 2.126 | 0.925 | 0.293 | 1.712 | 1.668 | 0.202 | 1.367 | 1.299 | 1.197 | 1.2 | 1.22 | 0.785 | 0.779 | 1.385 | 1.427 | 0.726 | 0.5 | 0.653 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10793
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKLKILFLFMRLFRK,DRSKHRRRSQSPERAEKQRQGREWTDRSKHRRRS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.785
|
0.137
|
0.005
|
0.406
|
0.025
|
0.057
|
0.039
|
0.078
|
0.060
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002281
|
3.000
|
1.000
|
Hsc_gene_24678.t1
|
— | — | — |
KAI3421214.1 hypothetical protein GPALN_014841 [Globodera pallida]
|
MDP5016420
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-699
|
1.000
|
700-1061
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
123101.410
|
6.971
|
7.500
|
32.799
|
8.011
|
62.865
|
37.135
|
17.436
|
15.363
|
43.732
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
398.051
|
1.218
|
44.704
|
85.127
|
26.692
|
3.534
|
2.429
|
3.164
|
575.341
|
1247.394
|
959.371
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.963
|
5.983
|
1.037
|
-1.700
|
-2.907
|
— | — | — | — |
-2.595
|
-5.321
|
— | — |
No JSON data available for plots.