Hg_chrom6_TN10mRNA_11446
Organism: Heterodera glycines Gene Locus: chr6:1743360-1749098 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.026 | 0.995 | 0.875 | 0.369 | 1.381 | 0.548 | 0.764 | 0.401 | 1.07 | 1.265 | 1.539 | 1.73 | 1.857 | 0.668 | 0.546 | 0.917 | 1.096 | 1.094 | 0.411 | 0.708 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.676
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.388
|
0.327
|
0.172
|
0.630
|
0.165
|
0.158
|
0.182
|
0.076
|
0.155
|
0.742
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000246
|
7.000
|
3.000
|
Hsc_gene_16223.t1;Hsc_gene_24660.t1;Hsc_gene_25832.t1
|
Hsc_gene_8108.t1
|
— |
Q4R3G2.1 Serpin B6 [Macaca fascicularis]
|
KAH7723002.1 ANISERP protein [Aphelenchus avenae]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.775|GO:0110165_0.768|GO:0008150_0.718|GO:0003674_0.596|GO:0005622_0.582|GO:0016020_0.575|GO:0005737_0.528|GO:0009987_0.528
|
IPR000215+15-368+|IPR023796+15-368_21-374+|IPR036186+9-371+|IPR042178+19-340+|IPR042185+181-368+
|
SM00093+21-374+
|
PF00079+15-368+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+15-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-374
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.622
|
41431.810
|
6.727
|
0.500
|
26.738
|
10.428
|
46.257
|
53.743
|
13.636
|
13.102
|
49.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
342.476
|
53.437
|
78.321
|
67.515
|
115.013
|
138.813
|
279.793
|
73.962
|
3.775
|
1192.930
|
683.292
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.740
|
— |
1.024
|
-1.020
|
2.067
|
-8.387
|
4.322
|
— | — | — |
No JSON data available for plots.