Hg_chrom6_TN10mRNA_11448
Organism: Heterodera glycines Gene Locus: chr6:1769935-1773342 Feature type: polypeptideProtein Sequence
Length: 315
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.812 | 0.96 | 0.577 | 0.328 | 0.899 | 0.814 | 0.718 | 1.111 | 1.975 | 1.459 | 1.251 | 2.428 | 1.852 | 0.916 | 0.713 | 0.907 | 0.781 | 0.818 | 1.465 | 0.747 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10796
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
42-83
|
0.770
|
— | — | — | — |
0.000
|
— | — |
0.072
|
0.218
|
0.010
|
0.185
|
0.819
|
0.234
|
0.288
|
0.004
|
0.334
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001355
|
4.000
|
1.000
|
Hsc_gene_24662.t1
|
Hsc_gene_21080.t1;Hsc_gene_24655.t1;Hsc_gene_24662.t1
|
— |
O17795.1 Putative steroid dehydrogenase 2 [Caenorhabditis elegans]
|
ABC59299.1 17beta-hydroxysteroid dehydrogenase, partial [Heterodera glycines]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.829|GO:0110165_0.827|GO:0008150_0.745|GO:0016020_0.688|GO:0003674_0.666|GO:0005622_0.655|GO:0005737_0.636|GO:0043226_0.579|GO:0043229_0.571|GO:0071944_0.570|GO:0009987_0.569|GO:0043227_0.554|GO:0043231_0.548|GO:0005886_0.522|GO:0008152_0.503
|
IPR002347+49-247_50-67_128-139_178-194_184-192_204-223_225-242+|IPR036291+49-302+|IPR051019+4-309+
|
— |
PF00106+49-247+short_chain_dehydrogenase
|
— |
PTHR43899+4-309+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
314-315
|
1.000
|
1-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
35731.160
|
9.909
|
13.500
|
22.540
|
13.333
|
40.952
|
59.048
|
13.968
|
8.571
|
42.540
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
367.342
|
96.040
|
331.337
|
109.741
|
112.549
|
78.794
|
42.135
|
659.778
|
4.474
|
1067.375
|
611.846
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.559
|
— |
-1.487
|
— |
-0.501
|
-0.897
|
2.979
|
-3.839
|
-5.679
|
4.924
|
— | — | — |
No JSON data available for plots.