Hg_chrom6_TN10mRNA_11449
Organism: Heterodera glycines Gene Locus: chr6:1775513-1780804 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 0.823 | 0.643 | 0.333 | 0.857 | 0.824 | 0.651 | 1.125 | 2.072 | 1.564 | 1.364 | 1.891 | 1.786 | 0.928 | 0.722 | 0.873 | 0.791 | 0.828 | 1.484 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10797
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.832
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
15-46
|
0.961
|
— | — | — | — |
0.000
|
— | — |
0.074
|
0.227
|
0.014
|
0.185
|
0.812
|
0.201
|
0.259
|
0.005
|
0.304
|
0.159
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001355
|
4.000
|
1.000
|
Hsc_gene_24662.t1
|
Hsc_gene_21080.t1;Hsc_gene_24655.t1;Hsc_gene_24662.t1
|
— |
O17795.1 Putative steroid dehydrogenase 2 [Caenorhabditis elegans]
|
ABC59299.1 17beta-hydroxysteroid dehydrogenase, partial [Heterodera glycines]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.833|GO:0110165_0.833|GO:0008150_0.743|GO:0016020_0.701|GO:0005622_0.681|GO:0005737_0.669|GO:0003674_0.666|GO:0043226_0.611|GO:0043229_0.600|GO:0043227_0.585|GO:0043231_0.574|GO:0071944_0.566|GO:0009987_0.564|GO:0005886_0.514|GO:0003824_0.508|GO:0008152_0.507
|
IPR002347+49-247_50-67_128-139_178-194_184-192_204-223_225-242+|IPR036291+49-301+
|
— |
PF00106+49-247+short_chain_dehydrogenase
|
— |
PTHR43086+2-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
35342.820
|
10.054
|
15.500
|
23.473
|
13.183
|
41.158
|
58.842
|
14.791
|
8.682
|
41.801
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
112.543
|
74.306
|
87.437
|
38.818
|
53.994
|
81.320
|
33.820
|
315.261
|
8.079
|
229.458
|
134.581
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.074
|
-1.065
|
— |
0.602
|
-1.263
|
1.868
|
-3.094
|
-4.934
|
— | — | — | — |
No JSON data available for plots.