Hg_chrom6_TN10mRNA_11450
Organism: Heterodera glycines Gene Locus: chr6:1792127-1795608 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.69 | 0.887 | 0.693 | 0.146 | 1.059 | 0.978 | 0.555 | 1.483 | 1.977 | 1.374 | 1.348 | 2.243 | 1.648 | 1.059 | 0.519 | 1.029 | 1.042 | 0.835 | 1.304 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10798
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.247
|
0.326
|
0.113
|
0.421
|
0.665
|
0.127
|
0.325
|
0.007
|
0.173
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001355
|
4.000
|
1.000
|
Hsc_gene_24662.t1
|
Hsc_gene_21080.t1;Hsc_gene_24655.t1;Hsc_gene_24662.t1
|
— |
O17795.1 Putative steroid dehydrogenase 2 [Caenorhabditis elegans]
|
ABC59299.1 17beta-hydroxysteroid dehydrogenase, partial [Heterodera glycines]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.814|GO:0110165_0.814|GO:0008150_0.699|GO:0005622_0.684|GO:0016020_0.664|GO:0003674_0.661|GO:0005737_0.658|GO:0043226_0.600|GO:0043229_0.592|GO:0043227_0.572|GO:0043231_0.556|GO:0009987_0.507
|
IPR002347+2-172_53-64_103-119_129-148_150-167+|IPR036291+2-226+
|
— |
PF00106+2-172+short_chain_dehydrogenase
|
— |
PTHR43086+1-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-236
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
26764.320
|
9.289
|
6.500
|
24.576
|
12.288
|
45.763
|
54.237
|
14.407
|
10.169
|
43.220
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
69.548
|
90.792
|
111.307
|
47.403
|
71.107
|
106.212
|
54.483
|
308.713
|
0.255
|
7.826
|
4.581
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.075
|
-1.123
|
0.554
|
0.593
|
-0.959
|
1.450
|
-2.372
|
— |
5.946
|
— | — | — |
No JSON data available for plots.