Hg_chrom6_TN10mRNA_11451
Organism: Heterodera glycines Gene Locus: chr6:1799034-1802187 Feature type: polypeptideProtein Sequence
Length: 315
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.812 | 0.96 | 0.577 | 0.328 | 0.847 | 0.814 | 0.68 | 1.111 | 1.975 | 1.459 | 1.299 | 2.428 | 1.764 | 0.916 | 0.777 | 0.907 | 0.781 | 0.866 | 1.465 | 0.747 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10799
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
15-46
|
0.961
|
— | — | — | — |
0.000
|
— | — |
0.065
|
0.205
|
0.010
|
0.181
|
0.791
|
0.234
|
0.260
|
0.005
|
0.346
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001355
|
4.000
|
1.000
|
Hsc_gene_24662.t1
|
Hsc_gene_21080.t1;Hsc_gene_24655.t1;Hsc_gene_24662.t1
|
— |
O17795.1 Putative steroid dehydrogenase 2 [Caenorhabditis elegans]
|
ABC59299.1 17beta-hydroxysteroid dehydrogenase, partial [Heterodera glycines]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.828|GO:0110165_0.828|GO:0008150_0.743|GO:0016020_0.688|GO:0003674_0.663|GO:0005622_0.660|GO:0005737_0.637|GO:0043226_0.585|GO:0043229_0.577|GO:0009987_0.567|GO:0043227_0.559|GO:0071944_0.559|GO:0043231_0.552|GO:0005886_0.510|GO:0008152_0.505
|
IPR002347+49-247_50-67_128-139_178-194_184-192_204-223_225-242+|IPR036291+49-302+
|
— |
PF00106+49-247+short_chain_dehydrogenase
|
— |
PTHR43086+3-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
314-315
|
1.000
|
1-313
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
35781.310
|
10.139
|
16.500
|
22.857
|
13.016
|
41.270
|
58.730
|
14.603
|
8.254
|
42.540
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
92.950
|
42.567
|
179.852
|
45.245
|
45.032
|
31.278
|
24.495
|
369.240
|
3.565
|
127.340
|
74.294
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.852
|
— |
-1.885
|
— | — | — |
3.475
|
-3.787
|
— | — | — | — | — |
No JSON data available for plots.