Hg_chrom6_TN10mRNA_11455
Organism: Heterodera glycines Gene Locus: chr6:1854600-1861771 Feature type: polypeptideProtein Sequence
Length: 410
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.22 | 0.681 | 1.109 | 1.177 | 1.26 | 1.376 | 0.61 | 2.561 | 0.542 | 0.956 | 0.407 | 1.578 | 0.881 | 0.985 | 1.643 | 1.289 | 1.16 | 0.554 | 0.75 | 0.574 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10803
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.863
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KREKASAERTRHRRN,RRHLQSALQEYKREKA
|
— | — |
3-34
|
0.999
|
— | — |
0.000
|
— | — |
0.379
|
0.234
|
0.019
|
0.617
|
0.210
|
0.204
|
0.200
|
0.008
|
0.331
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002288
|
3.000
|
1.000
|
Hsc_gene_24653.t1
|
— | — | — |
KAF7627231.1 PID domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006020+38-190_43-197_237-272+|IPR011993+29-188+|IPR051133+33-368+
|
SM00462+38-190+
|
PF14719+43-197_237-272+Phosphotyrosine_interaction_domain_(PTB/PID)
|
— |
PTHR11232+33-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
171-410
|
1.000
|
1-170
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
45728.690
|
6.381
|
-1.500
|
29.512
|
11.220
|
53.902
|
46.098
|
15.854
|
13.659
|
52.927
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
969.020
|
788.480
|
404.286
|
561.468
|
633.336
|
904.723
|
1215.264
|
806.650
|
101.291
|
2170.666
|
1283.791
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.194
|
-0.627
|
0.584
|
0.142
|
0.530
|
0.434
|
— |
0.728
|
-4.554
|
— | — | — | — |
No JSON data available for plots.