Hg_chrom6_TN10mRNA_11456
Organism: Heterodera glycines Gene Locus: chr6:1870804-1880939 Feature type: polypeptideProtein Sequence
Length: 373
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.185 | 0.561 | 0.926 | 1.202 | 1.251 | 1.925 | 0.766 | 2.815 | 0.536 | 1.123 | 0.528 | 1.577 | 0.67 | 0.567 | 1.641 | 0.996 | 1.143 | 0.609 | 0.825 | 0.71 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10804
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.641
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RRADEPQQMHKTLRR,KREKASAERTRHRRN,RRHLQSALQEYKREKA
|
32-66
|
0.937
|
— | — | — | — |
0.000
|
— | — |
0.368
|
0.259
|
0.021
|
0.590
|
0.238
|
0.204
|
0.236
|
0.016
|
0.382
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002288
|
3.000
|
1.000
|
Hsc_gene_24653.t1
|
— | — | — |
KAF7627231.1 PID domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006020+7-106_127-186+|IPR051133+7-274+
|
— |
PF14719+7-106_127-186+Phosphotyrosine_interaction_domain_(PTB/PID)
|
— |
PTHR11232+7-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
246-373
|
1.000
|
1-245
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.498
|
41901.790
|
7.044
|
6.500
|
29.759
|
11.528
|
53.619
|
46.381
|
17.158
|
12.601
|
48.525
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
251.942
|
632.886
|
258.207
|
205.243
|
162.669
|
432.147
|
256.434
|
323.998
|
10.762
|
242.330
|
143.087
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.523
|
-1.762
|
-0.222
|
-0.367
|
1.424
|
-0.743
|
— | — |
-4.610
|
4.489
|
— | — | — |
No JSON data available for plots.