SCN Proteipedia

Hg_chrom6_TN10mRNA_11464

Organism: Heterodera glycines Gene Locus: chr6:1944098-1946328 Feature type: polypeptide

Protein Sequence

Length: 317

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.624	1.321	0.86	1.958	1.157	1.537	0.601	1.262	0.911	1.108	0.765	2.041	1.49	0.364	1.223	1.127	0.983	1.052	0.243	0.835	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom6_TN10gene_10811	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	17-Not_Clustered	0.708

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.755	0.059	0.006	0.435	0.029	0.031	0.036	0.007	0.056	0.047

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003231	2.000	1.000	Hsc_gene_24679.t1	—	—	Q92570.3 Nuclear receptor subfamily 4 group A member 3 [Homo sapiens]	CAB4036152.1 retinoic acid receptor RXR-alpha-B isoform X2, partial [Paramuricea clavata]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.934\|GO:0005575_0.847\|GO:0065007_0.843\|GO:0110165_0.842\|GO:0050789_0.836\|GO:0009987_0.805\|GO:0005622_0.763\|GO:0050794_0.758\|GO:0003674_0.756\|GO:0043226_0.729\|GO:0005488_0.719\|GO:0050896_0.716\|GO:0043229_0.706\|GO:0008152_0.657\|GO:0043170_0.657\|GO:0019222_0.644\|GO:0031323_0.639\|GO:0044237_0.639\|GO:0044238_0.639\|GO:0009058_0.637\|GO:0060255_0.637\|GO:0009059_0.633\|GO:0044249_0.633\|GO:0080090_0.629\|GO:0010467_0.624\|GO:0009889_0.618\|GO:0031326_0.618\|GO:0010556_0.611\|GO:0006139_0.609\|GO:0010468_0.609\|GO:0034654_0.599\|GO:0090304_0.596\|GO:0141187_0.593\|GO:0016070_0.592\|GO:0032774_0.592\|GO:0097159_0.591\|GO:0019219_0.584\|GO:0006351_0.582\|GO:0051252_0.579\|GO:0006355_0.578\|GO:2001141_0.578\|GO:0051716_0.551\|GO:0032501_0.550\|GO:0003676_0.549\|GO:0016020_0.549\|GO:0032502_0.543\|GO:0003677_0.541\|GO:0007154_0.539\|GO:0023052_0.537\|GO:0043565_0.521\|GO:0007165_0.519\|GO:0048856_0.518\|GO:0003690_0.515\|GO:1990837_0.515\|GO:0000976_0.511\|GO:0001067_0.511\|GO:0006357_0.508\|GO:0006366_0.508\|GO:0000977_0.501	IPR001628+18-88_18-92_20-86_21-37_37-52_69-77_77-85+\|IPR013088+11-120+\|IPR050274+12-316+	SM00399+18-88+	PF00105+20-86+Zinc_finger,_C4_type_(two_domains)	—	PTHR24083+12-316+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-317	4umm_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.593	36041.090	6.839	2.000	25.237	11.041	50.789	49.211	13.565	11.672	49.211

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	325.905	92.958	447.411	202.307	142.920	160.378	133.969	224.550	1158.010	30.640	513.799

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.038	0.984	-1.037	-0.533	—	—	—	-0.601	5.482	—	—	—	—

No JSON data available for plots.

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