Hg_chrom6_TN10mRNA_11467
Organism: Heterodera glycines Gene Locus: chr6:2044268-2055372 Feature type: polypeptideProtein Sequence
Length: 918
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.064 | 0.887 | 0.713 | 0.751 | 0.581 | 0.866 | 0.7 | 1.362 | 1.525 | 1.31 | 0.281 | 2.371 | 1.483 | 0.943 | 1.178 | 0.84 | 1.0 | 1.337 | 1.592 | 1.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10814
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.083
|
0.069
|
0.007
|
0.114
|
0.378
|
0.728
|
0.550
|
0.012
|
0.710
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002289
|
2.000
|
2.000
|
Hsc_gene_22482.t1;Hsc_gene_22482.t2
|
Hsc_gene_13587.t2;Hsc_gene_16898.t1;Hsc_gene_16900.t1;Hsc_gene_22482.t1;Hsc_gene_22482.t2;Hsc_gene_22482.t3
|
— |
Q0EEE2.1 Patched domain-containing protein 3 [Mus musculus]
|
KAI1723441.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.812|GO:0110165_0.802|GO:0008150_0.775|GO:0071944_0.747|GO:0005886_0.731|GO:0016020_0.731|GO:0009987_0.570
|
IPR000731+263-430+|IPR003392+51-868+|IPR051697+3-870+
|
— |
PF02460+51-868+Patched_family
|
G3DSA:1.20.1640.10:FF:000013+674-871+PaTched_Related_family
|
PTHR10796+3-870+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
909-918
|
1.000
|
1-908
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
103027.060
|
7.698
|
14.500
|
17.756
|
14.270
|
36.928
|
63.072
|
10.349
|
7.407
|
50.654
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
1415.427
|
845.507
|
409.470
|
525.441
|
737.311
|
1070.444
|
2439.455
|
305.918
|
131.651
|
3718.675
|
2181.379
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.274
|
-0.823
|
0.467
|
0.458
|
0.552
|
1.198
|
-1.913
|
3.138
|
-4.955
|
— | — | — | — |
No JSON data available for plots.