Hg_chrom6_TN10mRNA_11468
Organism: Heterodera glycines Gene Locus: chr6:2055374-2058372 Feature type: polypeptideProtein Sequence
Length: 439
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.271 | 0.848 | 0.953 | 0.393 | 0.569 | 0.759 | 0.434 | 1.708 | 0.861 | 1.724 | 0.38 | 1.072 | 2.025 | 1.489 | 1.581 | 0.944 | 0.896 | 0.897 | 1.227 | 0.67 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10815
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.583
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
2-22
|
1.000
|
19-54
|
0.974
|
— | — |
0.004
|
— | — |
0.098
|
0.068
|
0.007
|
0.227
|
0.538
|
0.371
|
0.836
|
0.008
|
0.102
|
0.345
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004307
|
1.000
|
2.000
|
Hsc_gene_16896.t1;Hsc_gene_22484.t1
|
Hsc_gene_16895.t1;Hsc_gene_16896.t1;Hsc_gene_16897.t1;Hsc_gene_22484.t1
|
— |
Q24157.2 Beta-1,3-galactosyltransferase brn [Drosophila melanogaster]
|
KAI1700271.1 galactosyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.945|GO:0009987_0.753|GO:0008152_0.752|GO:0003674_0.712|GO:0009058_0.709|GO:0044238_0.690|GO:0003824_0.603|GO:0044237_0.585|GO:0044249_0.550|GO:0016740_0.542|GO:0016757_0.511|GO:0016758_0.510|GO:1901135_0.506
|
IPR002659+147-385_204-383+
|
— |
PF01762+204-383+Galactosyltransferase
|
— |
PTHR11214+147-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-439
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
49497.150
|
9.299
|
14.500
|
22.323
|
14.579
|
41.002
|
58.998
|
13.667
|
8.656
|
50.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
715.723
|
192.632
|
216.177
|
196.577
|
239.643
|
234.349
|
344.710
|
189.941
|
51.212
|
2487.620
|
1443.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.254
|
— |
0.566
|
-0.411
|
1.002
|
-5.729
|
— | — | — | — |
No JSON data available for plots.