Hg_chrom6_TN10mRNA_11469
Organism: Heterodera glycines Gene Locus: chr6:2068686-2076921 Feature type: polypeptideProtein Sequence
Length: 657
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.973 | 0.92 | 0.83 | 0.787 | 0.507 | 0.937 | 0.978 | 2.207 | 0.846 | 1.193 | 0.323 | 1.522 | 1.268 | 1.083 | 1.802 | 1.087 | 0.749 | 1.268 | 1.171 | 0.895 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10816
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.815
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
RRAFVRRWRHSPPFRRSKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.084
|
0.081
|
0.011
|
0.098
|
0.311
|
0.611
|
0.478
|
0.010
|
0.640
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002289
|
2.000
|
2.000
|
Hsc_gene_22482.t1;Hsc_gene_22482.t2
|
Hsc_gene_16900.t1
|
— |
Q03602.2 Patched-related protein 9 [Caenorhabditis elegans]
|
KAI1723441.1 patched family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.878|GO:0110165_0.878|GO:0016020_0.823|GO:0071944_0.785|GO:0005886_0.777|GO:0005622_0.645|GO:0043226_0.604|GO:0043229_0.599|GO:0005737_0.592|GO:0043227_0.590|GO:0008150_0.521
|
IPR000731+222-307+|IPR003392+10-307+|IPR051697+431-524+
|
— |
PF02460+10-307+Patched_family
|
— |
PTHR10796+431-524+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-657
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
73058.570
|
9.707
|
36.500
|
22.983
|
13.546
|
42.770
|
57.230
|
15.373
|
7.610
|
53.577
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
47.867
|
12.621
|
5.455
|
4.586
|
4.203
|
4.919
|
67.376
|
19.835
|
6.911
|
159.610
|
94.167
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.439
|
-1.598
|
— | — | — |
3.788
|
1.911
|
1.903
|
-4.624
|
— |
-4.722
|
— | — |
No JSON data available for plots.