Hg_chrom6_TN10mRNA_11480
Organism: Heterodera glycines Gene Locus: chr6:2160045-2160553 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.147 | 0.918 | 1.196 | 0.454 | 1.206 | 0.675 | 1.018 | 0.658 | 1.316 | 1.422 | 1.096 | 1.935 | 3.107 | 0.633 | 0.403 | 0.0 | 0.971 | 0.897 | 0.506 | 0.774 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10827
|
— | — |
1.556
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
4.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — |
0.877
|
0.110
|
2.000
|
— |
0.216
|
0.805
|
0.423
|
0.278
|
0.155
|
0.266
|
0.128
|
0.019
|
0.145
|
0.371
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002292
|
2.000
|
2.000
|
Hsc_gene_13591.t1;Hsc_gene_22487.t1
|
— | — | — |
KAI3420873.1 hypothetical protein GPALN_014492 [Globodera pallida]
|
WQS61021
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-152
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.823
|
17066.800
|
4.526
|
-6.000
|
24.342
|
15.789
|
36.842
|
63.158
|
10.526
|
13.816
|
45.395
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
29.012
|
0.157
|
0.435
|
0.996
|
52.336
|
246.009
|
0.611
|
23.366
|
0.000
|
5.460
|
3.120
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
5.678
|
2.249
|
-8.651
|
-3.505
|
-5.117
|
— | — | — | — | — |