Hg_chrom6_TN10mRNA_11488
Organism: Heterodera glycines Gene Locus: chr6:2249757-2251403 Feature type: polypeptideProtein Sequence
Length: 400
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 1.279 | 0.773 | 0.776 | 1.208 | 0.962 | 0.208 | 0.75 | 1.778 | 1.453 | 1.439 | 1.471 | 1.597 | 0.817 | 1.224 | 1.179 | 0.574 | 0.644 | 1.346 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10835
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKRKWIRLKR,RKMAPKFPLLSKIARK,KRVHCLSTFFDVRFKDK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.567
|
0.243
|
0.046
|
0.336
|
0.049
|
0.097
|
0.066
|
0.012
|
0.035
|
0.265
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000286
|
5.000
|
4.000
|
Hsc_gene_10456.t1;Hsc_gene_10456.t2;Hsc_gene_11859.t1;Hsc_gene_5596.t1
|
Hsc_gene_10456.t1;Hsc_gene_10456.t2;Hsc_gene_23589.t1;Hsc_gene_23590.t1
|
— | — |
KAI1695796.1 zinc finger BED domain-containing protein 1 [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.931|GO:0110165_0.926|GO:0016020_0.872|GO:0005622_0.861|GO:0043226_0.825|GO:0043229_0.816|GO:0005737_0.790|GO:0043227_0.783|GO:0043231_0.766|GO:0005634_0.610|GO:0031974_0.568|GO:0043233_0.568|GO:0070013_0.568|GO:0031981_0.566|GO:0005654_0.556|GO:0003674_0.520
|
IPR008906+292-368+|IPR012337+7-368+|IPR052035+152-368+
|
— |
PF05699+292-368+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+152-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-400
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
46215.910
|
9.878
|
19.000
|
28.500
|
10.500
|
49.500
|
50.500
|
17.000
|
11.500
|
41.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
25.708
|
10.108
|
10.755
|
7.866
|
14.324
|
12.567
|
2.233
|
3.309
|
47.538
|
53.883
|
51.164
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-2.481
|
-2.029
|
— | — | — | — | — | — |
No JSON data available for plots.