Hg_chrom6_TN10mRNA_11490
Organism: Heterodera glycines Gene Locus: chr6:2257624-2259702 Feature type: polypeptideProtein Sequence
Length: 273
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.065 | 0.681 | 0.733 | 1.137 | 0.672 | 0.939 | 1.134 | 1.832 | 1.384 | 0.842 | 0.555 | 1.508 | 1.526 | 1.057 | 1.869 | 0.89 | 0.661 | 1.332 | 0.0 | 0.539 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10837
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKH,RRRHECDLRTGTGRICRRR,RRHECDLRTGTGRICRRRF
|
14-34
|
0.999
|
— | — | — | — |
0.000
|
— | — |
0.773
|
0.202
|
0.105
|
0.281
|
0.163
|
0.096
|
0.058
|
0.015
|
0.058
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001356
|
4.000
|
1.000
|
Hsc_gene_24659.t1
|
— | — |
O29883.1 Archaeal Lon protease [Archaeoglobus fulgidus DSM 4304]
|
HXF83327.1 Lon family ATP-dependent protease [bacterium]
|
HDM71022
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004252|GO:0006508
|
GO:0005575_0.811|GO:0110165_0.802|GO:0008150_0.757|GO:0016020_0.709|GO:0005622_0.701|GO:0005737_0.674|GO:0043226_0.666|GO:0043229_0.658|GO:0043227_0.638|GO:0043231_0.628|GO:0008152_0.550|GO:0044238_0.523|GO:0009987_0.503
|
IPR008269+115-242+|IPR013087+6-36_6-41_45-68+|IPR014721+85-265+|IPR020568+110-263+
|
SM00355+6-36_45-68+
|
PF05362+115-242+Lon_protease_(S16)_C-terminal_proteolytic_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-273
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.819
|
29862.520
|
9.939
|
18.000
|
24.542
|
10.989
|
41.392
|
58.608
|
16.484
|
8.059
|
53.480
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
salmon
|
71.484
|
29.289
|
39.455
|
32.597
|
23.291
|
27.543
|
29.632
|
31.488
|
7.584
|
227.069
|
133.004
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.517
|
— | — | — | — | — | — | — | — |
8.060
|
No JSON data available for plots.