Hg_chrom6_TN10mRNA_11492
Organism: Heterodera glycines Gene Locus: chr6:2274209-2276879 Feature type: polypeptideProtein Sequence
Length: 428
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 1.304 | 0.85 | 1.209 | 1.129 | 1.078 | 0.445 | 1.402 | 0.831 | 1.389 | 0.92 | 1.237 | 1.687 | 1.033 | 0.906 | 1.068 | 0.843 | 0.885 | 1.618 | 1.443 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10839
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
RKKR,KKSVQNQWAKQKKKPI
|
— | — |
4-34
|
0.956
|
1-19
|
0.980
|
1.000
|
0.000
|
0.000
|
0.254
|
0.132
|
0.049
|
0.251
|
0.481
|
0.133
|
0.296
|
0.050
|
0.300
|
0.481
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002293
|
4.000
|
0.000
|
0.000
|
Hsc_gene_17702.t1;Hsc_gene_17713.t2
|
— |
P83088.4 Alpha-(1,3)-fucosyltransferase C [Drosophila melanogaster]
|
KAF7636818.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.881|GO:0003674_0.804|GO:0003824_0.692|GO:0005575_0.666|GO:0110165_0.663|GO:0016740_0.645|GO:0016757_0.609|GO:0016758_0.608|GO:0009987_0.603|GO:0008417_0.601|GO:0008152_0.593|GO:0016020_0.568|GO:0005622_0.546|GO:0071944_0.541|GO:0005737_0.511|GO:0043226_0.506
|
IPR001503+17-385_196-359+|IPR031481+63-171+|IPR038577+131-342+
|
— |
PF00852+196-359+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+63-171+Fucosyltransferase,_N-terminal
|
G3DSA:3.40.50.11660:FF:000002+135-337+Alpha-(1,3)-fucosyltransferase
|
PTHR48350+17-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-428
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.634
|
49700.730
|
6.748
|
2.000
|
24.766
|
15.888
|
47.196
|
52.804
|
13.318
|
11.449
|
46.495
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
37.011
|
0.927
|
4.867
|
1.946
|
2.955
|
20.619
|
8.718
|
31.027
|
0.000
|
135.273
|
77.299
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.178
|
— | — | — |
2.815
|
-1.234
|
— |
-1.689
|
— | — | — | — | — |