Hg_chrom6_TN10mRNA_11493
Organism: Heterodera glycines Gene Locus: chr6:2281987-2286892 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.529 | 0.871 | 2.042 | 0.553 | 1.693 | 1.166 | 0.7 | 2.139 | 0.832 | 1.12 | 1.215 | 2.045 | 0.743 | 0.823 | 1.037 | 0.535 | 0.745 | 0.648 | 1.44 | 1.18 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10840
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.128
|
0.195
|
0.024
|
0.179
|
0.849
|
0.580
|
0.701
|
0.008
|
0.139
|
0.420
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000426
|
7.000
|
1.000
|
Hsc_gene_17706.t1
|
Hsc_gene_17676.t1;Hsc_gene_17684.t1;Hsc_gene_17684.t2;Hsc_gene_17706.t1
|
— |
B5X4E0.1 Calumenin-B [Salmo salar]
|
AVA09679.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.792|GO:0110165_0.792|GO:0005622_0.705|GO:0016020_0.697|GO:0043226_0.669|GO:0008150_0.668|GO:0005737_0.649|GO:0071944_0.629|GO:0043229_0.624|GO:0043227_0.620|GO:0005886_0.614|GO:0003674_0.588|GO:0043231_0.588|GO:0005488_0.531|GO:0005773_0.508|GO:0012505_0.502
|
IPR002048+121-156_132-148_204-239_208-236_241-276_245-273_252-266_289-318_292-349_299-321_322-357_326-354+|IPR011992+120-233_206-366+|IPR018247+134-146_217-229_254-266_299-311_335-347+
|
SM00054+208-236_245-273_289-318_326-354+
|
PF13202+132-148_252-266+EF_hand|PF13499+292-349+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000090+276-352+calumenin_isoform_X2|G3DSA:1.10.238.10:FF:000104+91-273+calumenin_isoform_X1
|
PTHR10827+92-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
72-119;329-374
|
2.000
|
1-71;120-328
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.923
|
43721.600
|
4.634
|
-23.000
|
38.770
|
12.834
|
55.348
|
44.652
|
17.380
|
21.390
|
43.850
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
194.562
|
287.559
|
112.405
|
174.251
|
309.748
|
389.126
|
222.698
|
143.681
|
2.764
|
234.334
|
135.090
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.584
|
-0.860
|
0.741
|
0.797
|
— |
-0.796
|
-1.551
|
0.777
|
-6.571
|
6.253
|
— | — | — |
No JSON data available for plots.