Hg_chrom6_TN10mRNA_11494
Organism: Heterodera glycines Gene Locus: chr6:2283242-2286892 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.524 | 0.908 | 2.184 | 0.518 | 1.852 | 1.078 | 0.608 | 2.252 | 0.734 | 1.015 | 1.32 | 2.12 | 0.834 | 0.751 | 1.042 | 0.472 | 0.689 | 0.637 | 1.617 | 1.237 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10840
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.809
|
0.306
|
0.000
|
— |
0.339
|
0.237
|
0.050
|
0.253
|
0.951
|
0.332
|
0.306
|
0.050
|
0.230
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000426
|
7.000
|
1.000
|
Hsc_gene_17706.t1
|
Hsc_gene_17676.t1;Hsc_gene_17684.t1;Hsc_gene_17684.t2;Hsc_gene_17706.t1
|
— |
B5X4E0.1 Calumenin-B [Salmo salar]
|
AVA09679.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.791|GO:0110165_0.791|GO:0005622_0.712|GO:0016020_0.692|GO:0043226_0.669|GO:0008150_0.667|GO:0005737_0.656|GO:0043229_0.625|GO:0043227_0.621|GO:0071944_0.614|GO:0005886_0.601|GO:0043231_0.590|GO:0003674_0.584|GO:0005488_0.533|GO:0005773_0.505
|
IPR002048+80-115_91-107_163-198_167-195_200-235_204-232_211-225_248-277_251-308_258-280_281-316_285-313+|IPR011992+79-192_165-325+|IPR018247+93-105_176-188_213-225_258-270_294-306+
|
SM00054+167-195_204-232_248-277_285-313+
|
PF13202+91-107_211-225+EF_hand|PF13499+251-308+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000090+235-311+calumenin_isoform_X2|G3DSA:1.10.238.10:FF:000104+50-232+calumenin_isoform_X1
|
PTHR10827+51-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78;288-333
|
1.000
|
79-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
39388.600
|
4.581
|
-23.500
|
41.441
|
13.814
|
57.057
|
42.943
|
18.318
|
23.123
|
42.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
194.562
|
287.559
|
112.405
|
174.251
|
309.748
|
389.126
|
222.698
|
143.681
|
2.764
|
234.334
|
135.090
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.584
|
-0.860
|
0.741
|
0.797
|
— |
-0.796
|
-1.551
|
0.777
|
-6.571
|
6.253
|
— | — | — |