Hg_chrom6_TN10mRNA_11495
Organism: Heterodera glycines Gene Locus: chr6:2288722-2293531 Feature type: polypeptideProtein Sequence
Length: 373
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 0.873 | 1.852 | 0.37 | 1.832 | 1.306 | 0.574 | 1.206 | 1.072 | 1.159 | 1.056 | 2.05 | 0.745 | 0.67 | 1.313 | 0.574 | 0.659 | 0.691 | 0.206 | 1.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10841
|
— | — |
1.556
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.566
|
0.358
|
0.025
|
0.699
|
0.228
|
0.126
|
0.141
|
0.013
|
0.128
|
0.155
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010252
|
1.000
|
1.000
|
Hsc_gene_17707.t1
|
— | — |
Q6IQP3.1 Calumenin-A [Danio rerio]
|
AVA09679.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.825|GO:0110165_0.825|GO:0005622_0.762|GO:0008150_0.742|GO:0005737_0.702|GO:0043226_0.684|GO:0016020_0.659|GO:0003674_0.637|GO:0009987_0.626|GO:0043227_0.597|GO:0005488_0.589|GO:0043229_0.576|GO:0043231_0.514
|
IPR002048+110-145_121-137_185-198+|IPR011992+137-241+|IPR018247+123-135_150-162_187-199+|IPR023410+242-347+|IPR036815+241-366_242-362+
|
— |
PF00244+242-347+14-3-3_protein|PF13202+121-137_185-198+EF_hand
|
— |
PTHR10827+94-263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
62-132;373-373
|
2.000
|
1-61;133-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.931
|
43375.380
|
4.480
|
-24.500
|
36.997
|
10.724
|
53.887
|
46.113
|
15.818
|
21.180
|
42.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
78.252
|
40.415
|
24.501
|
19.356
|
14.880
|
34.059
|
65.048
|
93.160
|
13.964
|
222.598
|
133.184
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.956
|
-1.199
|
— | — |
1.212
|
0.941
|
1.348
|
— | — | — | — | — | — |
No JSON data available for plots.