Hg_chrom6_TN10mRNA_11496
Organism: Heterodera glycines Gene Locus: chr6:2294241-2304920 Feature type: polypeptideProtein Sequence
Length: 496
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 2.016 | 1.283 | 0.487 | 1.075 | 1.137 | 0.48 | 1.008 | 1.389 | 1.281 | 0.978 | 2.016 | 1.288 | 0.543 | 1.111 | 0.806 | 0.925 | 0.733 | 0.775 | 1.186 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10842
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.725
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.372
|
0.246
|
0.021
|
0.557
|
0.244
|
0.135
|
0.094
|
0.198
|
0.291
|
0.231
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000426
|
7.000
|
1.000
|
Hsc_gene_17706.t1
|
Hsc_gene_17680.t2;Hsc_gene_17680.t3;Hsc_gene_17680.t4
|
— |
B5X186.1 Calumenin-A [Salmo salar]
|
AVA09679.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.812|GO:0110165_0.811|GO:0005622_0.754|GO:0016020_0.748|GO:0043226_0.709|GO:0043229_0.674|GO:0043227_0.671|GO:0005737_0.670|GO:0043231_0.660|GO:0008150_0.654|GO:0071944_0.649|GO:0005886_0.631|GO:0003674_0.594|GO:0005773_0.546|GO:0012505_0.539|GO:0005488_0.506|GO:0009987_0.506
|
IPR002048+70-105+|IPR011992+26-144+|IPR018247+83-95+|IPR021109+204-298_207-330+
|
— | — |
G3DSA:1.10.238.10:FF:000104+6-138+calumenin_isoform_X1
|
PTHR10827+16-146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-34
|
1.000
|
35-496
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
57303.950
|
6.037
|
-3.000
|
27.419
|
11.694
|
51.815
|
48.185
|
13.911
|
13.508
|
46.371
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
323.401
|
31.771
|
34.273
|
26.504
|
21.993
|
40.667
|
45.688
|
68.466
|
2.073
|
1312.315
|
750.783
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
0.906
|
— |
0.647
|
— |
-9.426
|
— |
-5.418
|
— | — |
No JSON data available for plots.