Hg_chrom6_TN10mRNA_11498
Organism: Heterodera glycines Gene Locus: chr6:2341211-2343744 Feature type: polypeptideProtein Sequence
Length: 509
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.302 | 1.919 | 2.072 | 0.61 | 0.884 | 0.756 | 0.631 | 0.884 | 0.83 | 0.77 | 1.101 | 1.156 | 0.6 | 0.491 | 0.762 | 0.702 | 1.353 | 0.982 | 1.814 | 0.867 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10844
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRINASIKTAQHRNKKQER
|
— | — | — | — |
1-28
|
0.773
|
0.793
|
0.000
|
0.000
|
0.209
|
0.122
|
0.030
|
0.445
|
0.168
|
0.173
|
0.147
|
0.005
|
0.282
|
0.633
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000427
|
7.000
|
1.000
|
Hsc_gene_17712.t1
|
— | — | — |
KAI3414146.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.757|GO:0008150_0.753|GO:0110165_0.746|GO:0003674_0.637|GO:0005622_0.548|GO:0009987_0.536|GO:0016020_0.520
|
IPR000668+230-499_230-506+|IPR013128+169-497+|IPR038765+172-501+
|
SM00645+230-506+
|
PF00112+230-499+Papain_family_cysteine_protease
|
— |
PTHR12411+169-497+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-179
|
1.000
|
180-509
|
6rni_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.738
|
56359.990
|
4.481
|
-24.500
|
29.470
|
9.234
|
53.831
|
46.169
|
12.770
|
16.699
|
60.118
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
3827.611
|
10.030
|
8.623
|
7.015
|
7.999
|
1771.032
|
65.301
|
42784.430
|
0.514
|
0.000
|
0.220
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
7.804
|
-4.750
|
4.498
|
-9.215
|
— | — | — | — | — |