Hg_chrom6_TN10mRNA_11503
Organism: Heterodera glycines Gene Locus: chr6:2368895-2374639 Feature type: polypeptideProtein Sequence
Length: 531
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.38 | 2.015 | 1.917 | 0.714 | 1.318 | 0.628 | 0.628 | 0.847 | 0.963 | 0.662 | 0.97 | 1.108 | 0.837 | 0.435 | 0.846 | 0.484 | 1.513 | 0.742 | 2.028 | 0.72 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10849
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.881
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRINASIKTAQHRNKKQER
|
— | — | — | — |
1-28
|
0.756
|
0.670
|
0.000
|
0.000
|
0.213
|
0.130
|
0.029
|
0.457
|
0.184
|
0.136
|
0.146
|
0.004
|
0.287
|
0.693
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000427
|
7.000
|
1.000
|
Hsc_gene_17712.t1
|
— | — | — |
KAI3414146.1 Trehalase [Globodera pallida]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.788|GO:0110165_0.786|GO:0008150_0.685|GO:0003674_0.660|GO:0005622_0.559|GO:0016020_0.538|GO:0005737_0.508|GO:0003824_0.503
|
IPR000668+242-525_242-528+|IPR013128+180-519+|IPR038765+184-525+
|
SM00645+242-528+
|
PF00112+242-525+Papain_family_cysteine_protease
|
— |
PTHR12411+180-519+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-191
|
1.000
|
192-531
|
3pdf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
59242.800
|
4.286
|
-37.500
|
30.697
|
9.793
|
54.426
|
45.574
|
12.241
|
18.456
|
58.192
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
1625.494
|
3205.902
|
366.383
|
144.862
|
124.060
|
1015.014
|
90.026
|
13928.456
|
44.694
|
0.000
|
19.154
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.360
|
-4.605
|
-1.229
|
— |
3.047
|
-3.482
|
3.680
|
-7.130
|
— | — |
6.348
|
— | — |