Hg_chrom6_TN10mRNA_11504
Organism: Heterodera glycines Gene Locus: chr6:2376820-2377877 Feature type: polypeptideProtein Sequence
Length: 279
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.625 | 0.834 | 1.043 | 0.742 | 1.254 | 0.643 | 0.299 | 0.896 | 1.752 | 1.356 | 1.738 | 1.265 | 1.593 | 0.896 | 0.731 | 1.587 | 0.764 | 0.597 | 1.103 | 0.633 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10850
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.793
|
0.207
|
0.050
|
0.315
|
0.081
|
0.133
|
0.115
|
0.083
|
0.080
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001991
|
4.000
|
0.000
|
0.000
|
— | — | — |
KAF7633751.1 Dimer_Tnp_hAT domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.740
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.940|GO:0005575_0.756|GO:0110165_0.753|GO:0032501_0.747|GO:0032502_0.741|GO:0048856_0.741|GO:0005622_0.726|GO:0007275_0.721|GO:0009791_0.680|GO:0016020_0.521|GO:0043226_0.508|GO:0043229_0.506
|
IPR008906+196-271+|IPR012337+160-273+|IPR052035+176-278+
|
— |
PF05699+196-271+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+176-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-279
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
31932.970
|
8.684
|
7.500
|
30.108
|
11.111
|
51.971
|
48.029
|
16.846
|
13.262
|
43.728
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
36.962
|
9.333
|
7.525
|
4.077
|
3.481
|
4.765
|
4.166
|
15.388
|
21.246
|
127.500
|
81.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.333
|
— | — | — | — |
1.587
|
-1.742
|
— | — |
-4.992
|
— | — |
No JSON data available for plots.