Hg_chrom6_TN10mRNA_11505
Organism: Heterodera glycines Gene Locus: chr6:2379838-2383613 Feature type: polypeptideProtein Sequence
Length: 573
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.258 | 2.232 | 2.189 | 0.662 | 0.931 | 0.537 | 0.54 | 1.134 | 0.814 | 0.66 | 1.137 | 1.027 | 0.776 | 0.47 | 0.748 | 0.524 | 1.659 | 0.925 | 1.879 | 0.616 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10851
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKSATALPLKFKKQER,KRINASIKTAQHRNKKQER
|
— | — | — | — |
1-28
|
0.789
|
0.655
|
0.000
|
0.000
|
0.232
|
0.126
|
0.050
|
0.363
|
0.107
|
0.123
|
0.096
|
0.004
|
0.221
|
0.664
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000427
|
7.000
|
1.000
|
Hsc_gene_17712.t1
|
— | — | — |
KAI3414146.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.767|GO:0110165_0.761|GO:0008150_0.684|GO:0003674_0.565|GO:0005622_0.518
|
IPR000668+285-567_285-570+|IPR013128+228-561+|IPR038765+271-567+
|
SM00645+285-570+
|
PF00112+285-567+Papain_family_cysteine_protease
|
— |
PTHR12411+228-561+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-230
|
1.000
|
231-573
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
63801.790
|
4.475
|
-30.500
|
31.065
|
9.599
|
56.545
|
43.455
|
13.438
|
17.627
|
61.257
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
1817.563
|
18.259
|
7.089
|
3.559
|
4.455
|
945.387
|
9.137
|
20205.576
|
0.514
|
3.904
|
2.451
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.594
|
-2.495
|
— | — |
7.723
|
-6.683
|
4.321
|
-10.970
|
— | — | — | — | — |