Hg_chrom6_TN10mRNA_11511
Organism: Heterodera glycines Gene Locus: chr6:2432046-2435928 Feature type: polypeptideProtein Sequence
Length: 590
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.552 | 1.34 | 0.77 | 1.227 | 0.989 | 1.521 | 0.464 | 1.356 | 1.318 | 1.145 | 0.976 | 0.499 | 2.307 | 0.75 | 0.934 | 1.138 | 0.806 | 0.822 | 1.956 | 1.147 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10857
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.908
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
8-44
|
0.800
|
— | — | — | — |
0.000
|
— | — |
0.101
|
0.059
|
0.002
|
0.178
|
0.416
|
0.219
|
0.873
|
0.027
|
0.238
|
0.277
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004310
|
1.000
|
2.000
|
Hsc_gene_17691.t1;Hsc_gene_17691.t2
|
Hsc_gene_17691.t2
|
— |
P83088.4 Alpha-(1,3)-fucosyltransferase C [Drosophila melanogaster]
|
KAF7636818.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.879|GO:0003674_0.807|GO:0003824_0.694|GO:0005575_0.661|GO:0110165_0.658|GO:0016740_0.639|GO:0016757_0.610|GO:0016758_0.610|GO:0008417_0.602|GO:0009987_0.601|GO:0008152_0.595|GO:0016020_0.554|GO:0005622_0.529|GO:0071944_0.528
|
IPR001503+239-580_400-561+|IPR031481+251-369+|IPR038577+332-542+
|
— |
PF00852+400-561+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+251-369+Fucosyltransferase,_N-terminal
|
G3DSA:3.40.50.11660:FF:000002+334-542+Alpha-(1,3)-fucosyltransferase
|
PTHR48350+239-580+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-590
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
68991.690
|
7.948
|
13.000
|
23.898
|
17.458
|
48.475
|
51.525
|
13.729
|
10.169
|
44.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
171.395
|
1.956
|
4.867
|
2.763
|
44.045
|
21.940
|
7.106
|
15.415
|
0.000
|
713.068
|
407.467
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
3.970
|
-0.991
|
-1.625
|
— | — |
-10.264
|
— | — | — |
-8.454
|
No JSON data available for plots.