Hg_chrom6_TN10mRNA_11519
Organism: Heterodera glycines Gene Locus: chr6:2465953-2468293 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.438 | 1.25 | 1.76 | 0.927 | 1.075 | 1.103 | 0.704 | 1.882 | 1.434 | 0.944 | 1.792 | 2.214 | 0.448 | 0.62 | 1.317 | 0.614 | 0.705 | 0.57 | 1.654 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10864
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RIKRKAGDAPDTGKIAKLLSKLKRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.323
|
0.401
|
0.057
|
0.442
|
0.249
|
0.018
|
0.177
|
0.433
|
0.099
|
0.332
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000426
|
7.000
|
1.000
|
Hsc_gene_17706.t1
|
— | — |
Q28BT4.1 Calumenin [Xenopus tropicalis]
|
AVA09679.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.787|GO:0110165_0.778|GO:0005622_0.761|GO:0043226_0.702|GO:0043229_0.702|GO:0016020_0.674|GO:0005737_0.658|GO:0008150_0.655|GO:0043227_0.651|GO:0043231_0.643|GO:0003674_0.540|GO:0071944_0.502
|
IPR002048+96-131+|IPR011992+45-127+|IPR018247+109-121+
|
— | — | — |
PTHR10827+8-87+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
184-186
|
1.000
|
1-183
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.719
|
21794.830
|
8.605
|
7.500
|
38.172
|
10.753
|
56.452
|
43.548
|
22.043
|
16.129
|
43.011
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
91.114
|
2.141
|
2.611
|
3.673
|
24.241
|
27.746
|
8.812
|
4.408
|
0.000
|
371.010
|
212.006
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
2.686
|
— |
-1.645
|
-2.771
|
— |
-9.383
|
— | — | — | — |
No JSON data available for plots.