Hg_chrom6_TN10mRNA_11520
Organism: Heterodera glycines Gene Locus: chr6:2499508-2503327 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.435 | 1.282 | 1.002 | 0.339 | 1.181 | 1.363 | 0.586 | 1.28 | 1.837 | 1.277 | 1.402 | 1.39 | 1.695 | 0.833 | 0.603 | 0.956 | 0.613 | 1.133 | 0.606 | 0.868 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10865
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.760
|
0.479
|
0.000
|
— |
0.182
|
0.337
|
0.114
|
0.352
|
0.687
|
0.086
|
0.150
|
0.088
|
0.227
|
0.691
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004312
|
2.000
|
1.000
|
Hsc_gene_16902.t1
|
— | — |
Q22295.2 Putative UDP-glucuronosyltransferase ugt-50 [Caenorhabditis elegans]
|
KAI1716740.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.804|GO:0003674_0.747|GO:0005575_0.681|GO:0110165_0.655|GO:0003824_0.645|GO:0009987_0.622|GO:0005622_0.602|GO:0016020_0.602|GO:0016740_0.589|GO:0005737_0.565|GO:0043226_0.560|GO:0016757_0.557|GO:0043229_0.550|GO:0050896_0.541|GO:0043227_0.528|GO:0008194_0.525|GO:0043231_0.512|GO:0008152_0.509
|
IPR002213+34-466_253-463+|IPR035595+375-418+|IPR050271+27-457+
|
— |
PF00201+253-463+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+27-457+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-508
|
7es2_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
58284.290
|
7.128
|
4.500
|
27.362
|
12.402
|
48.622
|
51.378
|
14.764
|
12.598
|
42.913
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2593.547
|
8.377
|
340.433
|
5081.659
|
425.673
|
66.769
|
38.117
|
1023.106
|
8713.130
|
2192.871
|
4987.268
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.119
|
9.102
|
4.003
|
-3.610
|
-2.657
|
-0.799
|
3.838
|
-4.607
|
— | — | — | — | — |