Hg_chrom6_TN10mRNA_11521
Organism: Heterodera glycines Gene Locus: chr6:2499508-2503327 Feature type: polypeptideProtein Sequence
Length: 530
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.417 | 1.316 | 0.961 | 0.39 | 1.164 | 1.306 | 0.606 | 1.321 | 1.845 | 1.3 | 1.372 | 1.332 | 1.625 | 0.871 | 0.616 | 0.97 | 0.65 | 1.115 | 0.581 | 0.888 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10865
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.760
|
0.479
|
0.000
|
— |
0.176
|
0.319
|
0.107
|
0.344
|
0.688
|
0.092
|
0.153
|
0.108
|
0.247
|
0.704
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004312
|
2.000
|
1.000
|
Hsc_gene_16902.t1
|
Hsc_gene_16902.t1
|
— |
Q22295.2 Putative UDP-glucuronosyltransferase ugt-50 [Caenorhabditis elegans]
|
KAI1716740.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.805|GO:0003674_0.750|GO:0005575_0.680|GO:0110165_0.657|GO:0003824_0.643|GO:0009987_0.626|GO:0016020_0.602|GO:0005622_0.600|GO:0016740_0.589|GO:0043226_0.559|GO:0005737_0.557|GO:0016757_0.557|GO:0043229_0.548|GO:0050896_0.542|GO:0043227_0.526|GO:0008194_0.525|GO:0043231_0.513|GO:0008152_0.512
|
IPR002213+34-488_274-485+|IPR035595+397-440+|IPR050271+24-479+
|
— |
PF00201+274-485+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+24-479+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-530
|
7es1_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.679
|
60679.070
|
7.332
|
6.000
|
26.981
|
12.264
|
48.491
|
51.509
|
14.717
|
12.264
|
43.396
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
2593.547
|
8.377
|
340.433
|
5081.659
|
425.673
|
66.769
|
38.117
|
1023.106
|
8713.130
|
2192.871
|
4987.268
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.119
|
9.102
|
4.003
|
-3.610
|
-2.657
|
-0.799
|
3.838
|
-4.607
|
— | — | — | — | — |