Hg_chrom6_TN10mRNA_11530
Organism: Heterodera glycines Gene Locus: chr6:2553035-2559336 Feature type: polypeptideProtein Sequence
Length: 713
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 1.142 | 0.714 | 0.242 | 1.286 | 1.007 | 0.751 | 1.192 | 1.184 | 1.042 | 1.233 | 1.65 | 1.286 | 0.836 | 1.202 | 1.483 | 0.736 | 0.786 | 0.755 | 0.866 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10874
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKSK,PGIKRAR,KKEHNQLKREEKKWRD
|
— | — | — | — |
1-17
|
0.827
|
0.996
|
0.000
|
0.000
|
0.384
|
0.201
|
0.114
|
0.108
|
0.066
|
0.022
|
0.109
|
0.437
|
0.199
|
0.908
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000894
|
2.000
|
4.000
|
Hsc_gene_11888.t1;Hsc_gene_17703.t1;Hsc_gene_22494.t1;Hsc_gene_22494.t2
|
Hsc_gene_13597.t1
|
— | — |
KAI1710449.1 moulting cycle domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.949|GO:0005575_0.929|GO:0110165_0.929|GO:0032502_0.784|GO:0048856_0.784|GO:0032501_0.783|GO:0007275_0.755|GO:0009888_0.694|GO:0008544_0.670|GO:0018996_0.670|GO:0040002_0.670|GO:0042303_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0005576_0.568|GO:0005615_0.560
|
IPR006954+433-543+
|
— |
PF04870+433-543+Moulting_cycle
|
— |
PTHR21523+41-590+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
247-407
|
2.000
|
1-246;408-713
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
80120.010
|
9.749
|
25.500
|
28.050
|
10.940
|
51.753
|
48.247
|
16.410
|
11.641
|
47.546
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
42.104
|
33.736
|
36.157
|
2.683
|
7.383
|
10.013
|
15.301
|
3.932
|
2.764
|
141.178
|
81.858
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-3.788
|
-3.646
|
1.421
|
— | — | — |
2.094
|
-5.865
|
— |
-4.086
|
— | — |