Hg_chrom6_TN10mRNA_11543
Organism: Heterodera glycines Gene Locus: chr6:2627725-2629243 Feature type: polypeptideProtein Sequence
Length: 209
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 0.89 | 0.696 | 1.32 | 1.116 | 1.35 | 0.513 | 1.675 | 1.17 | 1.422 | 0.797 | 1.97 | 1.462 | 1.38 | 0.781 | 1.435 | 0.784 | 0.507 | 0.736 | 0.985 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10886
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
chloroplast
|
RKKR
|
— | — |
36-59
|
1.000
|
1-20
|
0.987
|
1.000
|
0.000
|
0.000
|
0.460
|
0.195
|
0.182
|
0.236
|
0.136
|
0.035
|
0.106
|
0.022
|
0.237
|
0.539
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002293
|
4.000
|
0.000
|
0.000
|
— | — | — |
KHN88025.1 Alpha-(1,3)-fucosyltransferase C [Toxocara canis]
|
No
|
0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.941|GO:0003674_0.754|GO:0003824_0.608|GO:0009987_0.602|GO:0016740_0.593|GO:0005575_0.592|GO:0110165_0.592|GO:0008417_0.569|GO:0016757_0.569|GO:0016758_0.569|GO:0005622_0.519
|
IPR001503+42-204_155-207+|IPR031481+52-130+|IPR038577+90-208+
|
— |
PF00852+155-207+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+52-130+Fucosyltransferase,_N-terminal
|
— |
PTHR48350+42-204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
209-209
|
1.000
|
1-208
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
23656.120
|
6.588
|
0.500
|
22.967
|
12.919
|
46.890
|
53.110
|
12.440
|
10.526
|
46.890
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |