Hg_chrom6_TN10mRNA_11545
Organism: Heterodera glycines Gene Locus: chr6:2636778-2638484 Feature type: polypeptideProtein Sequence
Length: 250
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.651 | 1.116 | 0.727 | 1.103 | 1.067 | 1.333 | 0.524 | 1.2 | 1.067 | 1.297 | 0.848 | 1.882 | 1.444 | 1.462 | 0.735 | 1.314 | 0.787 | 0.667 | 0.923 | 1.412 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10888
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKKR,KKSVQNPLAKQKKKPI
|
— | — | — | — |
1-19
|
0.977
|
1.000
|
0.000
|
0.000
|
0.358
|
0.158
|
0.150
|
0.222
|
0.248
|
0.063
|
0.103
|
0.019
|
0.242
|
0.595
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002293
|
4.000
|
0.000
|
0.000
|
Hsc_gene_17710.t1;Hsc_gene_17713.t1
|
— | — |
KHN88025.1 Alpha-(1,3)-fucosyltransferase C [Toxocara canis]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.946|GO:0003674_0.784|GO:0005575_0.683|GO:0009987_0.683|GO:0110165_0.683|GO:0003824_0.639|GO:0016740_0.616|GO:0005622_0.599|GO:0016757_0.593|GO:0016758_0.592|GO:0008417_0.588|GO:0016020_0.588|GO:0008152_0.572|GO:0005737_0.544|GO:0043226_0.543|GO:0043227_0.522|GO:0043229_0.522|GO:0071944_0.512|GO:0005886_0.503|GO:0043231_0.503
|
IPR001503+47-245_196-248+|IPR031481+63-170+|IPR038577+131-249+
|
— |
PF00852+196-248+Glycosyltransferase_family_10_(fucosyltransferase)_C-term|PF17039+63-170+Fucosyltransferase,_N-terminal
|
— |
PTHR48350+47-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
250-250
|
1.000
|
1-249
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
28445.510
|
6.479
|
0.000
|
22.000
|
13.600
|
46.000
|
54.000
|
11.600
|
10.400
|
48.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |