Hg_chrom6_TN10mRNA_11549
Organism: Heterodera glycines Gene Locus: chr6:2659164-2664552 Feature type: polypeptideProtein Sequence
Length: 441
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.976 | 1.951 | 1.031 | 0.86 | 1.172 | 0.756 | 0.783 | 1.02 | 0.957 | 0.858 | 0.928 | 1.867 | 0.819 | 0.741 | 0.694 | 0.939 | 1.227 | 0.928 | 1.919 | 1.067 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10891
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KKSATELPSKFDARKKWP
|
— | — | — | — |
1-28
|
0.817
|
0.969
|
0.000
|
0.000
|
0.194
|
0.122
|
0.037
|
0.435
|
0.226
|
0.206
|
0.166
|
0.004
|
0.264
|
0.795
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000427
|
7.000
|
1.000
|
Hsc_gene_17712.t1
|
— | — |
P43157.1 Cathepsin B-like cysteine proteinase [Schistosoma japonicum]
|
KAI3414146.1 Trehalase [Globodera pallida]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.758|GO:0110165_0.758|GO:0008150_0.742|GO:0003674_0.649|GO:0005622_0.555|GO:0016020_0.546|GO:0005737_0.515|GO:0009987_0.513
|
IPR000668+159-434_159-438_187-202_381-391_401-407+|IPR013128+90-429+|IPR025660+379-389+|IPR038765+84-433+
|
SM00645+159-438+
|
PF00112+159-434+Papain_family_cysteine_protease
|
— |
PTHR12411+90-429+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-94
|
2.000
|
1-35;95-441
|
4oem_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.593
|
49159.030
|
5.005
|
-9.500
|
24.263
|
11.111
|
49.660
|
50.340
|
11.565
|
12.698
|
55.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
6812.532
|
11.434
|
51.709
|
41.320
|
24.544
|
2455.269
|
46.638
|
75418.923
|
4.466
|
532.791
|
306.366
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.942
|
1.714
|
— |
-0.782
|
6.658
|
-5.707
|
4.844
|
-10.519
|
-7.005
|
— | — | — | — |