Hg_chrom6_TN10mRNA_11552
Organism: Heterodera glycines Gene Locus: chr6:2673476-2675076 Feature type: polypeptideProtein Sequence
Length: 406
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.002 | 1.088 | 0.985 | 0.595 | 1.396 | 0.947 | 0.235 | 0.246 | 1.478 | 1.165 | 1.381 | 1.594 | 1.642 | 0.805 | 1.056 | 1.267 | 0.727 | 0.709 | 1.326 | 0.869 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10894
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRCIAISTFLDPRFKDR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.783
|
0.190
|
0.046
|
0.297
|
0.183
|
0.141
|
0.117
|
0.027
|
0.097
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000361
|
7.000
|
1.000
|
Hsc_gene_334.t1
|
Hsc_gene_334.t1
|
— | — |
KAI1708117.1 putative zinc finger BED domain-containing protein 4-like [Ditylenchus destructor]
|
No
|
-0.970
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0005575_0.915|GO:0110165_0.902|GO:0005622_0.867|GO:0016020_0.839|GO:0003674_0.837|GO:0043226_0.821|GO:0005737_0.803|GO:0043229_0.801|GO:0043227_0.778|GO:0005488_0.766|GO:0043231_0.761|GO:0005515_0.737|GO:0042802_0.667|GO:0005634_0.639|GO:0031974_0.582|GO:0043233_0.582|GO:0070013_0.581|GO:0031981_0.574|GO:0005654_0.561
|
IPR008906+330-398+|IPR012337+89-396+|IPR052035+113-405+
|
— |
PF05699+330-398+hAT_family_C-terminal_dimerisation_region
|
— |
PTHR46481+113-405+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7
|
1.000
|
8-406
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
46734.680
|
7.854
|
3.000
|
28.571
|
11.084
|
50.246
|
49.754
|
14.778
|
13.793
|
44.581
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
7.397
|
10.072
|
28.197
|
15.957
|
4.624
|
3.167
|
4.168
|
20.111
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.260
|
— |
-0.717
|
-1.820
|
— | — |
2.570
|
-2.128
|
— |
4.853
|
— | — | — |
No JSON data available for plots.