Hg_chrom6_TN10mRNA_11556
Organism: Heterodera glycines Gene Locus: chr6:2702375-2705536 Feature type: polypeptideProtein Sequence
Length: 303
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.806 | 1.075 | 1.26 | 0.797 | 1.155 | 0.931 | 0.747 | 1.65 | 0.88 | 1.338 | 1.1 | 1.553 | 1.65 | 0.825 | 0.876 | 0.33 | 0.812 | 1.0 | 2.285 | 1.165 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10898
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
— | — | — | — | — | — |
1-20
|
0.946
|
1.000
|
0.000
|
0.000
|
0.440
|
0.369
|
0.084
|
0.389
|
0.405
|
0.185
|
0.398
|
0.005
|
0.236
|
0.519
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010260
|
1.000
|
1.000
|
Hsc_gene_25563.t1
|
— | — |
Q8L7F9.1 Beta-1,3-galactosyltransferase GALT1 [Arabidopsis thaliana]
|
KAI3419416.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.942|GO:0008152_0.786|GO:0009987_0.782|GO:0003674_0.765|GO:0009058_0.734|GO:0003824_0.709|GO:0044237_0.703|GO:0044238_0.681|GO:0044249_0.656|GO:1901135_0.641|GO:1901137_0.606|GO:0016740_0.595|GO:0005575_0.583|GO:0110165_0.583|GO:0016757_0.538|GO:0016758_0.537|GO:0043170_0.529|GO:0005622_0.507|GO:0009059_0.503
|
IPR002659+52-254_67-249+
|
— |
PF01762+67-249+Galactosyltransferase
|
— |
PTHR11214+52-254+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-303
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
35130.220
|
6.174
|
-2.000
|
28.713
|
16.172
|
44.224
|
55.776
|
14.851
|
13.861
|
45.215
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
29.401
|
0.616
|
4.441
|
2.772
|
3.637
|
12.351
|
3.662
|
233.033
|
0.000
|
30.935
|
17.677
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.613
|
— | — | — |
1.767
|
-1.741
|
4.140
|
-5.852
|
— | — | — | — | — |