Hg_chrom6_TN10mRNA_11567
Organism: Heterodera glycines Gene Locus: chr6:2752708-2753767 Feature type: polypeptideProtein Sequence
Length: 185
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 1.131 | 1.278 | 0.559 | 0.721 | 0.832 | 0.708 | 1.622 | 1.321 | 0.95 | 1.065 | 1.59 | 2.102 | 0.728 | 0.993 | 0.618 | 0.886 | 0.901 | 2.495 | 1.272 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10909
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.394
|
0.615
|
0.051
|
0.492
|
0.332
|
0.100
|
0.378
|
0.010
|
0.179
|
0.636
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000250
|
1.000
|
9.000
|
Hsc_gene_14858.t1;Hsc_gene_14858.t2;Hsc_gene_14859.t1;Hsc_gene_14864.t1;Hsc_gene_14865.t1;Hsc_gene_14865.t2;Hsc_gene_17743.t1;Hsc_gene_17747.t1;Hsc_gene_25562.t1
|
Hsc_gene_14858.t1;Hsc_gene_14858.t2;Hsc_gene_17743.t1;Hsc_gene_25562.t1
|
— | — |
KAI3419416.1 Beta-1,3-galactosyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.916|GO:0008152_0.753|GO:0003674_0.741|GO:0009987_0.719|GO:0044238_0.716|GO:0009058_0.705|GO:0003824_0.668|GO:0044237_0.647|GO:0044249_0.609|GO:1901135_0.593|GO:0016740_0.576|GO:1901137_0.564|GO:0005575_0.563|GO:0110165_0.562|GO:0016757_0.542|GO:0016758_0.540|GO:0043170_0.501
|
IPR002659+12-138_12-146+
|
— |
PF01762+12-138+Galactosyltransferase
|
— |
PTHR11214+12-146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-185
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
21502.600
|
7.832
|
4.000
|
26.486
|
18.378
|
44.324
|
55.676
|
15.135
|
11.351
|
46.486
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
100.333
|
11.450
|
6.769
|
11.068
|
8.724
|
165.467
|
110.566
|
831.910
|
0.000
|
9.224
|
5.271
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.981
|
— | — | — |
4.265
|
-0.571
|
2.228
|
-2.770
|
— |
4.325
|
— | — | — |
No JSON data available for plots.