Hg_chrom6_TN10mRNA_11574
Organism: Heterodera glycines Gene Locus: chr6:2846236-2854343 Feature type: polypeptideProtein Sequence
Length: 877
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.458 | 0.933 | 0.747 | 0.931 | 1.199 | 0.652 | 1.026 | 1.267 | 1.294 | 1.019 | 2.079 | 1.837 | 0.877 | 1.14 | 0.782 | 0.897 | 0.76 | 1.228 | 0.671 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10916
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
FKRR
|
— | — | — | — |
1-22
|
0.782
|
0.999
|
0.000
|
0.000
|
0.269
|
0.333
|
0.061
|
0.379
|
0.279
|
0.342
|
0.398
|
0.027
|
0.285
|
0.474
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000593
|
2.000
|
5.000
|
Hsc_gene_25564.t1;Hsc_gene_25564.t2;Hsc_gene_25564.t3;Hsc_gene_25581.t1;Hsc_gene_25581.t2
|
Hsc_gene_14860.t1;Hsc_gene_17744.t1
|
— | — |
KAI6222147.1 Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.956|GO:0009987_0.899|GO:0008152_0.809|GO:0044237_0.779|GO:0005575_0.758|GO:0110165_0.758|GO:0003674_0.703|GO:0005622_0.686|GO:0065007_0.656|GO:0009058_0.601|GO:0032501_0.600|GO:0003824_0.592|GO:0043170_0.589|GO:0032502_0.588|GO:0048856_0.588|GO:0044249_0.582|GO:0009059_0.561|GO:0016020_0.561|GO:0016740_0.529|GO:0048513_0.527|GO:0009888_0.517|GO:0043226_0.516|GO:0043229_0.511
|
IPR003406+504-773+
|
— |
PF02485+504-773+Core-2/I-Branching_enzyme
|
— |
PTHR46671+245-813+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-877
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
100402.730
|
8.721
|
23.000
|
25.086
|
12.543
|
46.978
|
53.022
|
14.367
|
10.718
|
46.066
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
448.966
|
41.987
|
45.079
|
38.421
|
28.452
|
432.795
|
80.395
|
3167.796
|
7.904
|
520.201
|
300.645
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-0.469
|
3.946
|
-2.421
|
2.769
|
-5.161
|
-6.146
|
— | — | — | — |