Hg_chrom6_TN10mRNA_11576
Organism: Heterodera glycines Gene Locus: chr6:2874922-2876309 Feature type: polypeptideProtein Sequence
Length: 140
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 0.997 | 0.649 | 1.724 | 0.476 | 1.099 | 0.51 | 1.071 | 1.905 | 2.027 | 0.758 | 0.84 | 1.587 | 0.687 | 0.875 | 1.122 | 0.82 | 0.758 | 4.396 | 0.21 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10918
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.787
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.012
|
— | — |
0.025
|
0.178
|
0.035
|
0.212
|
0.490
|
0.182
|
0.339
|
0.008
|
0.311
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_17738.t1
|
— | — |
KAH7726044.1 innexin inx-3 [Aphelenchus avenae]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.773|GO:0110165_0.767|GO:0008150_0.635|GO:0065007_0.538|GO:0050789_0.520
|
IPR000990+24-127_30-124+
|
— |
PF00876+24-127+Innexin
|
— |
PTHR11893+30-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-140
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
16114.060
|
8.401
|
5.500
|
17.857
|
14.286
|
39.286
|
60.714
|
11.429
|
6.429
|
44.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
228.569
|
9.468
|
3.840
|
4.207
|
21.497
|
21.880
|
49.078
|
19.780
|
47.868
|
915.432
|
543.619
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.524
|
-1.307
|
— |
2.318
|
— |
1.174
|
— |
1.451
|
-4.298
|
— |
-5.160
|
— | — |
No JSON data available for plots.