Hg_chrom6_TN10mRNA_11577
Organism: Heterodera glycines Gene Locus: chr6:2878949-2879539 Feature type: polypeptideProtein Sequence
Length: 114
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.51 | 0.816 | 1.276 | 0.907 | 0.731 | 1.799 | 0.418 | 0.877 | 0.975 | 1.067 | 1.861 | 1.548 | 1.706 | 1.012 | 0.895 | 0.501 | 1.007 | 1.063 | 1.35 | 1.29 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10919
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.829
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.316
|
0.449
|
0.096
|
0.165
|
0.113
|
0.078
|
0.106
|
0.369
|
0.267
|
0.668
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000838
|
2.000
|
4.000
|
Hsc_gene_12138.t1;Hsc_gene_2096.t1;Hsc_gene_23287.t1;Hsc_gene_25577.t1
|
Hsc_gene_12138.t1;Hsc_gene_2096.t1;Hsc_gene_25577.t1
|
— |
G5EE06.1 Alpha-(1,3)-fucosyltransferase fut-5 [Caenorhabditis elegans]
|
KAF7636818.1 Glyco_tran_10_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0008417|GO:0016020
|
GO:0008150_0.866|GO:0003674_0.774|GO:0005575_0.689|GO:0110165_0.687|GO:0008152_0.658|GO:0005622_0.638|GO:0003824_0.622|GO:0016740_0.608|GO:0008417_0.598|GO:0016757_0.598|GO:0016758_0.598|GO:0043226_0.596|GO:0043229_0.588|GO:0016020_0.580|GO:0070085_0.567|GO:0005737_0.553|GO:0043227_0.545|GO:0043231_0.529|GO:0009987_0.521|GO:0036065_0.515
|
IPR001503+1-84_1-105+|IPR038577+1-62+
|
— |
PF00852+1-84+Glycosyltransferase_family_10_(fucosyltransferase)_C-term
|
— |
PTHR48350+1-105+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-114
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
13436.600
|
9.642
|
7.000
|
29.825
|
14.035
|
50.000
|
50.000
|
18.421
|
11.404
|
42.982
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
28.452
|
3.742
|
7.242
|
3.977
|
10.719
|
26.879
|
40.805
|
33.124
|
11.307
|
68.562
|
44.024
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.391
|
1.348
|
0.615
|
— | — | — | — | — | — | — |
No JSON data available for plots.