Hg_chrom6_TN10mRNA_11579
Organism: Heterodera glycines Gene Locus: chr6:2890296-2897460 Feature type: polypeptideProtein Sequence
Length: 877
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 1.246 | 1.078 | 0.865 | 0.969 | 1.082 | 0.679 | 1.197 | 1.191 | 1.294 | 0.985 | 2.079 | 1.774 | 0.833 | 1.14 | 0.733 | 0.785 | 0.76 | 1.316 | 0.57 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10921
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom6_TN10mRNA_11579
|
22-J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
FKRR
|
— | — | — | — |
1-24
|
0.935
|
0.999
|
0.000
|
0.000
|
0.270
|
0.345
|
0.035
|
0.418
|
0.203
|
0.271
|
0.372
|
0.039
|
0.271
|
0.585
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000593
|
2.000
|
5.000
|
Hsc_gene_25564.t1;Hsc_gene_25564.t2;Hsc_gene_25564.t3;Hsc_gene_25581.t1;Hsc_gene_25581.t2
|
Hsc_gene_25581.t1;Hsc_gene_25581.t2
|
— | — |
KAI6222147.1 Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016757
|
GO:0008150_0.851|GO:0003674_0.716|GO:0009987_0.688|GO:0008152_0.604|GO:0003824_0.596|GO:0044237_0.570|GO:0005575_0.561|GO:0110165_0.558|GO:0016740_0.531
|
IPR003406+513-782+
|
— |
PF02485+513-782+Core-2/I-Branching_enzyme
|
— |
PTHR46671+439-843+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-877
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
99686.760
|
7.755
|
13.500
|
26.226
|
12.429
|
45.724
|
54.276
|
14.481
|
11.745
|
46.978
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
243.573
|
6.249
|
38.244
|
17.362
|
67.459
|
144.032
|
62.597
|
242.104
|
38.955
|
819.648
|
485.065
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.378
|
1.335
|
-1.031
|
1.931
|
1.106
|
-1.193
|
0.643
|
-1.809
|
— | — | — | — | — |