Hg_chrom6_TN10mRNA_11586
Organism: Heterodera glycines Gene Locus: chr6:2924763-2927580 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 1.156 | 1.507 | 0.762 | 1.289 | 0.567 | 0.395 | 2.21 | 0.859 | 1.643 | 0.753 | 2.275 | 1.995 | 0.85 | 1.015 | 0.71 | 0.906 | 0.837 | 0.425 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10928
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.592
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.614
|
0.163
|
0.090
|
0.643
|
0.035
|
0.022
|
0.026
|
0.018
|
0.063
|
0.323
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001032
|
4.000
|
1.000
|
Hsc_gene_15188.t1
|
— | — | — |
WP_011833281.1 Fic family protein [Methanocorpusculum labreanum];ABN07080.1 filamentation induced by cAMP protein Fic [Methanocorpusculum labreanum Z]
|
KFY01985
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0005575_0.889|GO:0110165_0.888|GO:0003674_0.838|GO:0016020_0.823|GO:0050896_0.799|GO:0071944_0.763|GO:0005886_0.750|GO:0003824_0.729|GO:0006950_0.725|GO:0016740_0.689|GO:0005622_0.680|GO:0016772_0.658|GO:0016779_0.654|GO:0070566_0.650|GO:0070733_0.650|GO:0005737_0.644|GO:0009987_0.622|GO:0043226_0.607|GO:0043227_0.593|GO:0043229_0.586|GO:0043231_0.580|GO:0008152_0.530|GO:0005773_0.527|GO:0005488_0.525|GO:0051716_0.525|GO:0005515_0.516|GO:0044238_0.509|GO:0012505_0.508
|
IPR003812+65-181_66-162+|IPR036597+11-177_51-167+|IPR040198+58-164+
|
— |
PF02661+66-162+Fic/DOC_family
|
— |
PTHR13504+58-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
6i7l_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.844
|
20870.810
|
4.918
|
-7.000
|
30.387
|
14.365
|
48.066
|
51.934
|
14.365
|
16.022
|
45.856
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
67.752
|
29.522
|
4.867
|
1.999
|
6.460
|
16.393
|
11.352
|
9.632
|
3.237
|
263.902
|
152.189
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.839
|
-4.022
|
— |
1.659
|
1.360
|
— | — | — |
-6.621
|
— | — | — | — |
No JSON data available for plots.