Hg_chrom6_TN10mRNA_11588
Organism: Heterodera glycines Gene Locus: chr6:2931048-2939358 Feature type: polypeptideProtein Sequence
Length: 849
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.014 | 1.068 | 0.964 | 0.772 | 1.001 | 1.208 | 0.785 | 1.826 | 0.759 | 0.875 | 0.41 | 1.455 | 1.211 | 1.767 | 0.986 | 1.582 | 0.85 | 0.839 | 0.906 | 0.52 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10929
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RPLKRVR
|
— | — |
31-66
|
0.986
|
— | — |
0.000
|
— | — |
0.531
|
0.263
|
0.012
|
0.677
|
0.174
|
0.285
|
0.161
|
0.072
|
0.158
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001359
|
3.000
|
2.000
|
Hsc_gene_25589.t1;Hsc_gene_25589.t2
|
Hsc_gene_15187.t1;Hsc_gene_25589.t1;Hsc_gene_25589.t2
|
— |
Q9H7J1.2 Protein phosphatase 1 regulatory subunit 3E [Homo sapiens]
|
KAI1732203.1 carbohydrate/starch-binding module (family 21) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.778|GO:0009987_0.719|GO:0005575_0.656|GO:0110165_0.648|GO:0003674_0.595|GO:0008152_0.574|GO:0005622_0.568|GO:0044238_0.562|GO:0043170_0.558|GO:0044237_0.543|GO:0065007_0.517|GO:0050789_0.504
|
IPR005036+608-721_611-720+|IPR038175+587-724+|IPR050782+137-744+
|
— |
PF03370+611-720+Carbohydrate/starch-binding_module_(family_21)
|
— |
PTHR12307+137-744+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;140-310;534-595;737-849
|
3.000
|
2-139;311-533;596-736
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
92258.660
|
5.440
|
-16.500
|
22.497
|
10.954
|
48.057
|
51.943
|
11.190
|
11.307
|
58.422
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.