Hg_chrom6_TN10mRNA_11589
Organism: Heterodera glycines Gene Locus: chr6:2931048-2948986 Feature type: polypeptideProtein Sequence
Length: 813
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.101 | 0.858 | 0.962 | 0.679 | 1.066 | 1.262 | 0.82 | 1.538 | 0.738 | 0.931 | 0.429 | 1.519 | 1.093 | 1.703 | 1.079 | 1.652 | 0.786 | 0.876 | 0.946 | 0.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom6_TN10gene_10929
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RPLKRVR
|
— | — |
49-69
|
1.000
|
— | — |
0.000
|
— | — |
0.523
|
0.268
|
0.013
|
0.692
|
0.167
|
0.252
|
0.176
|
0.081
|
0.161
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001359
|
3.000
|
2.000
|
Hsc_gene_25589.t1;Hsc_gene_25589.t2
|
Hsc_gene_15187.t1;Hsc_gene_25589.t1;Hsc_gene_25589.t2;Hsc_gene_25591.t1
|
— |
Q9H7J1.2 Protein phosphatase 1 regulatory subunit 3E [Homo sapiens]
|
KAI1732203.1 carbohydrate/starch-binding module (family 21) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.775|GO:0009987_0.719|GO:0005575_0.669|GO:0110165_0.662|GO:0003674_0.583|GO:0005622_0.580|GO:0008152_0.561|GO:0043170_0.551|GO:0044238_0.550|GO:0044237_0.536|GO:0065007_0.517|GO:0050789_0.502
|
IPR005036+572-685_575-684+|IPR038175+551-688+|IPR050782+103-708+
|
— |
PF03370+575-684+Carbohydrate/starch-binding_module_(family_21)
|
— |
PTHR12307+103-708+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-274;498-559;701-813
|
2.000
|
275-497;560-700
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
87770.860
|
5.247
|
-16.500
|
22.878
|
9.471
|
47.847
|
52.153
|
11.193
|
11.685
|
58.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
turquoise
|
214.208
|
985.337
|
196.634
|
67.882
|
115.964
|
126.232
|
68.534
|
100.088
|
177.615
|
181.200
|
179.663
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.555
|
-3.998
|
-1.426
|
0.742
|
— |
-0.872
|
— | — | — | — | — | — | — |
No JSON data available for plots.